PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G1546
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 374aa    MW: 41707.8 Da    PI: 9.8582
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G1546genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-2156147187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                  +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++          ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++a
  Gh_D08G1546  56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMDA 147
                  7*************************************64442233489*************************97799***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-2355148No hitNo description
SMARTSM005951.9E-1364153IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY  180
DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID  240
HKYGTNPNPN PNVNANSHPS KGNFGGSGSG SAYGTRILRG FEDMPEKTAA SGKRERERDA  300
VTEMVSAIKV LGDEFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS  360
ERKKKPKRMP SPQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28290.0boll| ovule| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475374.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0D2S0Z50.0A0A0D2S0Z5_G
STRINGPOPTR_0014s05010.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-82Trihelix family protein